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Beta diversity using Aitchison distance of raw milk samples with six outlier samples removed is shown here in (a) hierarchical clustering and (b) multidimensional scaling.

Journal: mSystems

Article Title: Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production

doi: 10.1128/msystems.00840-24

Figure Lengend Snippet: Beta diversity using Aitchison distance of raw milk samples with six outlier samples removed is shown here in (a) hierarchical clustering and (b) multidimensional scaling.

Article Snippet: Multidimensional scaling (MDS; Matlab function cmdscale, P = 2) and permutational multivariate analysis of variance (PERMANOVA, function f_permanova, iter = 10,000, from the Fathom toolbox [ ] for MATLAB) were applied on the pairwise Aitchison distances of all samples excluding the four baseline and two outside farm samples identified as low-diversity outliers on the supported microbial genera table.

Techniques: